metacom - Analysis of the 'Elements of Metacommunity Structure'
Functions to analyze coherence, boundary clumping, and turnover following the pattern-based metacommunity analysis of Leibold and Mikkelson 2002 <doi:10.1034/j.1600-0706.2002.970210.x>. The package also includes functions to visualize ecological networks, and to calculate modularity as a replacement to boundary clumping.
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ecologymetacommunity
6.00 score 11 stars 1 dependents 30 scripts 310 downloadshelminthR - Access London Natural History Museum Host-Helminth Record Database
Access to large host-parasite data is often hampered by the availability of data and difficulty in obtaining it in a programmatic way to encourage analyses. 'helminthR' provides accesss to the London Natural History Museum's host-parasite database, one of the largest host-parasite databases existing currently.
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disease-networkshelminthopen-dataparasites
5.02 score 10 stars 14 scripts 39 downloadsinsectDisease - Ecological Database of the World's Insect Pathogens
David Onstad provided us with this insect disease database, sometimes referred to as the 'Ecological Database of the Worlds Insect Pathogens' or EDWIP. Files have been converted from 'SQL' to csv, and ported into 'R' for easy exploration and analysis. Thanks to the Macroecology of Infectious Disease Research Coordination Network (RCN) for funding and support. Data are also served online in a static format at <https://edwip.ecology.uga.edu/>.
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software
4.15 score 14 stars 3 scripts 6 downloads