Package: metacom 1.5.3
metacom: Analysis of the 'Elements of Metacommunity Structure'
Functions to analyze coherence, boundary clumping, and turnover following the pattern-based metacommunity analysis of Leibold and Mikkelson 2002 <doi:10.1034/j.1600-0706.2002.970210.x>. The package also includes functions to visualize ecological networks, and to calculate modularity as a replacement to boundary clumping.
Authors:
metacom_1.5.3.tar.gz
metacom_1.5.3.zip(r-4.7)metacom_1.5.3.zip(r-4.6)metacom_1.5.3.zip(r-4.5)
metacom_1.5.3.tgz(r-4.6-any)metacom_1.5.3.tgz(r-4.5-any)
metacom_1.5.3.tar.gz(r-4.7-any)metacom_1.5.3.tar.gz(r-4.6-any)
metacom_1.5.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
metacom/json (API)
NEWS
| # Install 'metacom' in R: |
| install.packages('metacom', repos = c('https://taddallas.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/taddallas/metacom/issues
- TestMatrices - Test matrices used to evaluate metacommunity functions
Last updated from:7ddba6e7e2. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 111 | ||
| source / vignettes | OK | 139 | ||
| linux-release-x86_64 | NOTE | 119 | ||
| macos-release-arm64 | NOTE | 145 | ||
| macos-oldrel-arm64 | NOTE | 164 | ||
| windows-devel | NOTE | 143 | ||
| windows-release | NOTE | 82 | ||
| windows-oldrel | NOTE | 77 | ||
| wasm-release | OK | 91 |
Exports:BoundaryClumpCoherenceImagineMetacommunityNullMakerOrderMatrixTurnover
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Pattern-based analysis of metacommunity structure | metacom-package metacom |
| Determines boundary clumping | BoundaryClump |
| Determines coherence | Coherence |
| Plotting of site-by-species interaction matrices | Imagine |
| Analysis of the Elements of Metacommunity Structure | Metacommunity |
| Null matrix creator | NullMaker |
| Ordinates interaction matrix | OrderMatrix |
| Test matrices used to evaluate metacommunity functions | TestMatrices |
| Determines species turnover | Turnover |
